Publications

Full pulblication list in ORCID:

https://orcid.org/0000-0001-7268-0306

Ni T*, Zhu Y*, Yang Z*, Xu C, Chaban Y, Nesterova T, Ning J, Bocking T, Parker M, Monnie C, Ahn J, Perilla, Zhang P. Structure of native HIV-1 cores and their interactions with IP6 and CypA. Science Advances (in press).

Ni T*, Frosio T*, Mendonca L*, Sheng Y, Clare D, Himes B, Zhang P. High-resolution in situ structure determination by cryo-electron tomography and subtomogram averaging using emClarity. Nature Protocols (in press).

Mendonça L, Howe A, Gilchrist JB, Sheng Y, Sun D, Knight ML, Zanetti-Domingues LC, Bateman B, Krebs AS, Chen L, Radecke J, Li VD, Ni T, Kounatidis I, Koronfel MA, Szynkiewicz M, Harkiolaki M, Martin-Fernandez ML, James W, Zhang P. Correlative multi-scale cryo-imaging unveils SARS-CoV-2 assembly and egress. Nat Commun. 2021 Jul 30;12(1):4629. doi: 0.1038/s41467-021-24887-y. PMID: 34330917; PMCID: PMC8324836.

Huokko T, Ni T, Dykes GF, Simpson DM, Brownridge P, Conradi FD, Beynon RJ, Nixon PJ, Mullineaux CW, Zhang P, Liu LN. Probing the biogenesis pathway and dynamics of thylakoid membranes. Nat Commun. 2021 Jun 9;12(1):3475. doi: 10.1038/s41467-021-23680-1. PMID: 34108457; PMCID: PMC8190092.

Liu C, Mendonça L, Yang Y, Gao Y, Shen C, Liu J, Ni T, Ju B, Liu C, Tang X, Wei J, Ma X, Zhu Y, Liu W, Xu S, Liu Y, Yuan J, Wu J, Liu Z, Zhang Z, Liu L, Wang P, Zhang P. The Architecture of Inactivated SARS-CoV-2 with Postfusion Spikes Revealed by Cryo-EM and Cryo-ET. Structure. 2020 Nov 3;28(11):1218-1224.e4. doi: 10.1016/j.str.2020.10.001. Epub 2020 Oct 15. PMID: 33058760; PMCID: PMC7557167.

Ni T, Gerard S, Zhao G, Dent K, Ning J, Zhou J, Shi J, Anderson-Daniels J, Li W, Jang S, Engelman AN, Aiken C, Zhang P. Intrinsic curvature of the HIV-1 CA hexamer underlies capsid topology and interaction with cyclophilin A. Nat Struct Mol Biol. 2020 Sep;27(9):855-862. doi: 10.1038/s41594-020-0467-8. Epub 2020 Aug 3. PMID: 32747784; PMCID: PMC8064030.

Ni T*, Jiao F*, Yu X*, Aden S, Ginger L, Williams SI, Bai F, Pražák V, Karia D, Stansfeld P, Zhang P, Munson G, Anderluh G, Scheuring S, Gilbert RJC. Structure and mechanism of bactericidal mammalian perforin-2, an ancient agent of innate immunity. Sci Adv. 2020 Jan 29;6(5):eaax8286. doi: 10.1126/sciadv.aax8286. PMID: 32064340; PMCID: PMC6989145.

Zhao Y, Zhou D, Ni T, Karia D, Kotecha A, Wang X, Rao Z, Jones EY, Fry EE, Ren J, Stuart DI. Hand-foot-and-mouth disease virus receptor KREMEN1 binds the canyon of Coxsackie Virus A10. Nat Commun. 2020 Jan 7;11(1):38. doi:10.1038/s41467-019-13936-2. PMID: 31911601; PMCID: PMC6946704.

Ni T, Williams SI, Rezelj S, Anderluh G, Harlos K, Stansfeld PJ, Gilbert RJC. Structures of monomeric and oligomeric forms of the Toxoplasma gondii perforin-like protein 1. Sci Adv. 2018 Mar 21;4(3):eaaq0762. doi: 10.1126/sciadv.aaq0762. PMID: 29750191; PMCID: PMC5943054.

Ni T, Gilbert RJC. Repurposing a pore: highly conserved perforin-like proteins with alternative mechanisms. Philos Trans R Soc Lond B Biol Sci. 2017 Aug 5;372(1726):20160212. doi: 10.1098/rstb.2016.0212. PMID: 28630152; PMCID: PMC5483515.

Ni T, Kalli AC, Naughton FB, Yates LA, Naneh O, Kozorog M, Anderluh G, Sansom MS, Gilbert RJ. Structure and lipid-binding properties of the kindlin-3 pleckstrin homology domain. Biochem J. 2017 Feb 15;474(4):539-556. doi: 10.1042/BCJ20160791. Epub 2016 Dec 14. PMID: 27974389; PMCID: PMC5290484.

Kong Y, Janssen BJ, Malinauskas T, Vangoor VR, Coles CH, Kaufmann R, Ni T, Gilbert RJ, Padilla-Parra S, Pasterkamp RJ, Jones EY. Structural Basis for Plexin Activation and Regulation. Neuron. 2016 Aug 3;91(3):548-60. doi: 10.1016/j.neuron.2016.06.018. Epub 2016 Jul 7. PMID: 27397516; PMCID: PMC4980550.

Lu J, Fang L, Zheng H, Lao J, Yang F, Sun L, Xiao J, Lin J, Song T, Ni T, Raghwani J, Ke C, Faria NR, Bowden TA, Pybus OG, Li H. The Evolution and Transmission of Epidemic GII.17 Noroviruses. J Infect Dis. 2016 Aug 15;214(4):556-64. doi: 10.1093/infdis/jiw208. Epub 2016 May 24. PMID: 27354370; PMCID: PMC4957445.

Ni T, Harlos K, Gilbert R. Structure of astrotactin-2: a conserved vertebrate-specific and perforin-like membrane protein involved in neuronal development. Open Biol. 2016 May;6(5):160053. doi: 10.1098/rsob.160053. Epub 2016 May 4. PMID: 27249642; PMCID: PMC4892435.

Yu ZQ, Ni T, Hong B, Wang HY, Jiang FJ, Zou S, Chen Y, Zheng XL, Klionsky DJ, Liang Y, Xie Z. Dual roles of Atg8-PE deconjugation by Atg4 in autophagy. Autophagy. 2012 Jun;8(6):883-92. doi: 10.4161/auto.19652. Epub 2012 Jun 1. PMID: 22652539; PMCID: PMC3427254.